miRBase entry: lgi-mir-1994b

Stem-loop lgi-mir-1994b

Accession

MI0010254

Description

Lottia gigantea lgi-mir-1994b precursor miRNA

Gene family

MIPF0000743; mir-1994

Sequence

uucucaggaagaacauucugucuacauguuacacuaaccaUGAGACAGUGUGUCCUCCCUCAggcuca
.(((.(((.((.((((.((((((.(((((((...))).)))))))))).)))).)).))).)))....

Structure

---u   c   a  a    u      a    -   c 
    ucu agg ag acau cugucu caug uua  
    ||| ||| || |||| |||||| |||| ||| a
    ggA UCC UC UGUG GACAGA GUac aau  
acuc   C   C  C    U      -    c   c

Annotation confidence Not enough data

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Genome context

KB202283.1: 5290316-5290383 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lgi-mir-1994b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lgi-miR-1994b

Accession	MIMAT0009725
Description	Lottia gigantea lgi-miR-1994b mature miRNA
Sequence	41 - UGAGACAGUGUGUCCUCCCUCA - 62
Evidence	not_experimental

References

PubMed ID: 19196333
The deep evolution of metazoan microRNAs
"Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
"Evol Dev (2009) 11:50-68