miRBase entry: isc-mir-2001

Stem-loop isc-mir-2001


Accession
MI0010250
Description
Ixodes scapularis isc-mir-2001 precursor miRNA

Literature search
1 open access papers mention isc-mir-2001
(1 sentences)

Sequence

uccuggccgccUUGUGACCGUUACAAUGGGCAUGuugguccacgugcagaugcccacugucacguucacugggcggac
......((((((.((((.(((.(((.(((((((.(((.........)))))))))).))).))).)))).))))))..

Structure
uccugg      U    C   U   A       G   guc 
      ccgccU GUGA CGU ACA UGGGCAU uug   c
      |||||| |||| ||| ||| ||||||| |||   a
      ggcggg cacu gca ugu acccgua gac   c
----ca      u    u   c   c       -   gug 


Annotation confidence Not enough data
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Genome context
DS758004: 38911-38988 [-]

Database links

Mature isc-miR-2001

Accession MIMAT0009721
Description Ixodes scapularis isc-miR-2001 mature miRNA
Sequence 12 - UUGUGACCGUUACAAUGGGCAUG - 34
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68