miRBase entry: cte-mir-1996b

Stem-loop cte-mir-1996b


Accession
MI0010241
Description
Capitella teleta cte-mir-1996b precursor miRNA


Sequence

guuucuagcgucuuccagcAUCAAGUGAGGUCAGAUCUUGGguaaugguacuauuuggcgacccaggauuacuguucucaacugacgcuggcagacugcu
......(((((((.(((((.(((..(((((.((((((((((((..((.((.....)).)))))))))))..))).)))))..))).))))).)))).)))

Structure
guuucu   -    u     A   AG     U   --         aa  g  c 
      agc gucu ccagc UCA  UGAGG CAG  AUCUUGGgu  ug ua u
      ||| |||| ||||| |||  ||||| |||  |||||||||  || || a
      ucg caga ggucg agu  acucu guc  uaggaccca  gc gu u
------   u    c     c   ca     u   au         --  g  u 


Annotation confidence Not enough data
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Genome context
KB295515.1: 126189-126288 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cte-mir-1996b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-1996b

Accession MIMAT0009712
Description Capitella teleta cte-miR-1996b mature miRNA
Sequence 20 - AUCAAGUGAGGUCAGAUCUUGG - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68