miRBase entry: aqu-mir-2015

Stem-loop aqu-mir-2015


Accession
MI0010223
Description
Amphimedon queenslandica aqu-mir-2015 precursor miRNA


Sequence

7951 reads, 84366 reads per million, 9 experiments
ucucaugauguauugUCAUGUAUUGUGGAGGGGAGAgacuuuaaggaguagcuuuacugucuccaugagcucACCUCUCCAUCAUGCAUGACAaaacuagugagaugaug
((((((...((.(((((((((((.(((((((((.(((.(((...(((((((.....))).))))..)))))).))))))))).))))))))))).))..)))))).....

Structure
-----      gau  a           U         A   a   uaa    -   c 
     ucucau   gu uugUCAUGUAU GUGGAGGGG GAg cuu   ggag uag u
     ||||||   || ||||||||||| ||||||||| ||| |||   |||| ||| u
     agagug   ca aACAGUACGUA UACCUCUCC cuc gag   ccuc guc u
guagu      -au  a           C         A   -   -ua    u   a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature aqu-miR-2015-5p

Accession MIMAT0009688
Description Amphimedon queenslandica aqu-miR-2015-5p mature miRNA
Sequence 16 - UCAUGUAUUGUGGAGGGGAGA - 36
Evidence experimental
454 [1-2]

Mature aqu-miR-2015-3p

Accession MIMAT0009689
Description Amphimedon queenslandica aqu-miR-2015-3p mature miRNA
Sequence 73 - ACCUCUCCAUCAUGCAUGACA - 93
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197