Stem-loop spu-mir-219

Accession

MI0010221

Description

Strongylocentrotus purpuratus spu-mir-219 precursor miRNA

Gene family

MIPF0000044; mir-219

Literature search

1 open access papers mention spu-mir-219
(1 sentences)

Sequence

uccaugcgaguguucuccguUGAUUGUCCGAACGCAAUUCUUGuugaauuuccuagucaAGAACUGUGUACGGACAUCAgugguugauaccgcuagcaccu
.....(((.(((((..((((((((.(((((.(((((.(((((((((.......))).)))))).))))).)))))))))))))..))))))))........

Structure

---uccau   a     cu        U     A     A      -   aa 
        gcg guguu  ccguUGAU GUCCG ACGCA UUCUUG uug  u
        ||| |||||  |||||||| ||||| ||||| |||||| |||  u
        cgc cauag  ggugACUA CAGGC UGUGU AAGAac gau  u
uccacgau   -     uu        -     A     C      u   cc 

Annotation confidence Not enough data

Genome context

KN915964.1: 41740-41840 [-]

Mature spu-miR-219-5p

• Accession: MIMAT0009685
• Description: Strongylocentrotus purpuratus spu-miR-219-5p mature miRNA
• Sequence: 21 - UGAUUGUCCGAACGCAAUUCUUG - 43
• Evidence: experimental ; 454 [1]

Mature spu-miR-219-3p

• Accession: MIMAT0022953
• Description: Strongylocentrotus purpuratus spu-miR-219-3p mature miRNA
• Sequence: 60 - AGAACUGUGUACGGACAUCA - 79
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 22216218
   RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
   Kadri S, Hinman VF, Benos PV
   PLoS One (2011) 6:e29217