miRBase entry: sko-mir-193b

Stem-loop sko-mir-193b


Accession
MI0010213
Description
Saccoglossus kowalevskii sko-mir-193b precursor miRNA


Sequence

auauguuuuggggguuucucuggccacaguaugaaacguacaauccucaUACUGGCCAGCGAAAUCCCAAAaacagaa
...((((((.((((((((.(((((((..((((((............))))))))))))).)))))))).))))))...

Structure
aua      g        u       ca      aacgu 
   uguuuu gggguuuc cuggcca  guauga     a
   |||||| |||||||| |||||||  ||||||      
   acaaAA CCCUAAAG GACCGGU  CAUacu     c
aag      A        C       --      ccuaa 


Annotation confidence Not enough data
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Genome context
GL012752.1: 7988-8065 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sko-mir-193b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-193b

Accession MIMAT0009677
Description Saccoglossus kowalevskii sko-miR-193b mature miRNA
Sequence 50 - UACUGGCCAGCGAAAUCCCAAA - 71
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68