Stem-loop spu-mir-125

Accession

MI0010203

Description

Strongylocentrotus purpuratus spu-mir-125 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

2 open access papers mention spu-mir-125
(3 sentences)

Sequence

aaagagagacugccccccaaaUCCCUGAGACCCUAACUUGUGAugugcuuuuaucaaaucacACAGGUUGGUAUCUCAGGAAUUuggugggcgugucaugc
.......((((((((.((((((.(((((((..((((((((((.((..............))))))))))))..))))))).)))))).))))).)))....

Structure

aaagaga   -     c      C       CC          A  ugcuuu 
       gac ugccc ccaaaU CCUGAGA  CUAACUUGUG ug      u
       ||| ||||| |||||| |||||||  |||||||||| ||       
       cug gcggg gguUUA GGACUCU  GGUUGGACAc ac      a
---cgua   u     u      A       AU          -  uaaacu 

Annotation confidence Not enough data

Genome context

KN914398.1: 1095315-1095415 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from spu-mir-125

Mature spu-miR-125-5p

• Accession: MIMAT0009667
• Description: Strongylocentrotus purpuratus spu-miR-125-5p mature miRNA
• Sequence: 22 - UCCCUGAGACCCUAACUUGUGA - 43
• Evidence: experimental ; 454 [1]

Mature spu-miR-125-3p

• Accession: MIMAT0019161
• Description: Strongylocentrotus purpuratus spu-miR-125-3p mature miRNA
• Sequence: 63 - ACAGGUUGGUAUCUCAGGAAUU - 84
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27