miRBase entry: spu-mir-92c

Stem-loop spu-mir-92c


Accession
MI0010200
Description
Strongylocentrotus purpuratus spu-mir-92c precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

guagagggcagcaagcuggucgugaggaguugcaauuuguccacaugauaauaaucaucaUAUUGCACUCGUCCCGGCCUGCcugcuugcccucaaucuca
...((((((((((.((.(((((.((.((((.(((((.((.....(((((....))))))).))))))))).)).))))).)).))).))))))).......

Structure
----gua       -   a  u     u  g    u     u  uccac     a 
       gagggca gca gc ggucg ga gagu gcaau ug     augau a
       ||||||| ||| || ||||| || |||| ||||| ||     |||||  
       cucccgu cgu CG CCGGC CU CUCA CGUUA ac     uacua u
acucuaa       u   c  U     C  G    -     U  -----     a 


Annotation confidence Not enough data
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Genome context
KN917153.1: 420245-420345 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from spu-mir-92c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-92c

Accession MIMAT0009664
Description Strongylocentrotus purpuratus spu-miR-92c mature miRNA
Sequence 61 - UAUUGCACUCGUCCCGGCCUGC - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68