miRBase entry: spu-mir-33

Stem-loop spu-mir-33


Accession
MI0010194
Description
Strongylocentrotus purpuratus spu-mir-33 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

aucucuuucuuguagccaugGUGCAUUGUCGUUGCAUUGCAUgugucucuauaccccuauguagugcaagaacagugcaauauggaggcaagauaagcagc
..(((((((((((..(((((.((((((((..(((((((((((((((....))))....)))))))))))..)))))))).)))))..)))))).))).)).

Structure
au  -   -      ag     G        CG           ----    c 
  cu cuu ucuugu  ccaug UGCAUUGU  UUGCAUUGCAU    gugu u
  || ||| ||||||  ||||| ||||||||  |||||||||||    ||||  
  ga gaa agaacg  gguau acgugaca  aacgugaugua    caua c
-c  c   u      ga     a        ag           uccc    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KN913021.1: 69421-69521 [+]

Database links

Mature spu-miR-33

Accession MIMAT0009658
Description Strongylocentrotus purpuratus spu-miR-33 mature miRNA
Sequence 21 - GUGCAUUGUCGUUGCAUUGCAU - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68