miRBase entry: spu-mir-29a

Stem-loop spu-mir-29a


Accession
MI0010192
Description
Strongylocentrotus purpuratus spu-mir-29a precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
1 open access papers mention spu-mir-29a
(1 sentences)

Sequence

caaucuuccucuacugccugguugcaacugguggauaguguucuguuguagagucgaucuAAGCACCAGUUGAAAUCAGAGCuguaggggaagacccucau
...(((((((((((.((((((((.(((((((((..((((((((((...))))).))..)))..))))))))).)))))).)).))))))))))).......

Structure
----caa           u  -      g         ga   --  -     u 
       ucuuccucuac gc cugguu caacuggug  uag  ug uucug  
       ||||||||||| || |||||| |||||||||  |||  || ||||| u
       agaaggggaug CG GACUAA GUUGACCAC  Auc  gc gagau  
uacuccc           u  A      A         GA   ua  u     g 


Annotation confidence Not enough data
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Genome context
KN913988.1: 525307-525407 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from spu-mir-29a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-29a

Accession MIMAT0009656
Description Strongylocentrotus purpuratus spu-miR-29a mature miRNA
Sequence 61 - AAGCACCAGUUGAAAUCAGAGC - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68