miRBase entry: spu-mir-22

Stem-loop spu-mir-22


Accession
MI0010191
Description
Strongylocentrotus purpuratus spu-mir-22 precursor miRNA
Gene family
MIPF0000053; mir-22


Sequence

cagucuauauacgcucucauuugcaugcugauauguaaauguugagauucaaugacucuUAUAUGCCCGGUGAAGUGUAUAgaaac
...(((((((((.(((.((((((((((....))))))))))..))).((((.((.............)).)))))))))))))...

Structure
cag         gcucucauuugcaugcugauauguaaauguugaga    a  acucu 
   ucuauauac                                   uuca ug     U
   |||||||||                                   |||| ||     A
   agAUAUGUG                                   AAGU GC     U
caa         -----------------------------------    G  CCGUA 


Annotation confidence Not enough data
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Genome context
KN920327.1: 73798-73883 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from spu-mir-22
Name Accession Chromosome Start End Strand Confidence




Database links

Mature spu-miR-22

Accession MIMAT0009655
Description Strongylocentrotus purpuratus spu-miR-22 mature miRNA
Sequence 60 - UAUAUGCCCGGUGAAGUGUAUA - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68