Stem-loop spu-let-7

Accession

MI0010185

Description

Strongylocentrotus purpuratus spu-let-7 precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

3 open access papers mention spu-let-7
(9 sentences)

Sequence

guacaugaaugguccuuacgUGAGGUAGUAGGUUAUAUAGUUuggagauacacucaauggcgauagcuauacagccugcuagcuuuccuugggccauucac
.....((((((((((......(((.(((((((((.(((((((..(((.....))).........))))))).))))))))).))).....)))))))))).

Structure

guaca          uuacgU   G         A       -------ug   a 
     ugaauggucc      GAG UAGUAGGUU UAUAGUU         gag u
     ||||||||||      ||| ||||||||| |||||||         ||| a
     acuuaccggg      uuc aucguccga auaucga         cuc c
----c          -uuccu   g         c       uagcgguaa   a 

Annotation confidence Not enough data

Genome context

KN914398.1: 1096279-1096379 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from spu-let-7

Mature spu-let-7

• Accession: MIMAT0009649
• Description: Strongylocentrotus purpuratus spu-let-7 mature miRNA
• Sequence: 21 - UGAGGUAGUAGGUUAUAUAGUU - 42
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68