miRBase entry: sko-mir-281

Stem-loop sko-mir-281


Accession
MI0010177
Description
Saccoglossus kowalevskii sko-mir-281 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

agguggagugcuccuuguuggcgaggggagcaucgccagcgacgguauggcacaauacgcUGUCAUGGAGUUGCUCUCUUAAucgcaagguagccauuaca
..((((.(.(((((((((.((..(((((((((.(.(((..((((((.((......)).)))))).))).).)))))))))..)))))))).)))).)))).

Structure
ag    a u   -      u  cg         u g   gc      a  gc 
  gugg g gcu ccuugu gg  aggggagca c cca  gacggu ug  a
  |||| | ||| |||||| ||  ||||||||| | |||  |||||| ||   
  cauu c cga ggaacg cu  UUCUCUCGU G GGU  CUGUcg au  c
-a    a -   u      -  AA         U A   -A      c  aa 


Annotation confidence Not enough data
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Genome context
GL011707.1: 217203-217303 [+]

Database links

Mature sko-miR-281

Accession MIMAT0009641
Description Saccoglossus kowalevskii sko-miR-281 mature miRNA
Sequence 61 - UGUCAUGGAGUUGCUCUCUUAA - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68