miRBase entry: sko-mir-242

Stem-loop sko-mir-242


Accession
MI0010173
Description
Saccoglossus kowalevskii sko-mir-242 precursor miRNA
Gene family
MIPF0000731; mir-242_2


Sequence

cgaaccucacucuaauguguUGCGUAGGCGUUGUGCACAGUGacguauuacauaauuccugugcauuucucccacgcauagcguugaagugaaaugucauc
.((...(((((.((((((..(((((.((.(..((((((((.((..(((...)))..))))))))))..).)).)))))..)))))).)))))....))...

Structure
--c  -acc     c      gu     A  C UU        U  cg   u 
   ga    ucacu uaaugu  UGCGU GG G  GUGCACAG Ga  uau  
   ||    ||||| ||||||  ||||| || |  |||||||| ||  ||| a
   cu    aguga guugcg  acgca cc c  uacguguc cu  aua  
cua  guaa     a      au     c  u uu        -  ua   c 


Annotation confidence Not enough data
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Genome context
GL016162.1: 15133-15233 [+]

Database links

Mature sko-miR-242

Accession MIMAT0009637
Description Saccoglossus kowalevskii sko-miR-242 mature miRNA
Sequence 21 - UGCGUAGGCGUUGUGCACAGUG - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68