miRBase entry: sko-mir-193a

Stem-loop sko-mir-193a


Accession
MI0010171
Description
Saccoglossus kowalevskii sko-mir-193a precursor miRNA


Sequence

auuguuaCGGGAUUUGAUUGAUCAGUUCaaguguuuugucugAACUGGCCUUUUAAGUCCCGCAauguu
...(((.((((((((((..(.((((((((.(........))))))))).)..)))))))))).)))...

Structure
auu   a          UU A        a ugu 
   guu CGGGAUUUGA  G UCAGUUCa g   u
   ||| ||||||||||  | |||||||| |    
   uaA GCCCUGAAUU  C GGUCAAgu c   u
uug   C          UU C        - ugu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL012752.1: 7651-7719 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from sko-mir-193a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-193a-3p

Accession MIMAT0009635
Description Saccoglossus kowalevskii sko-miR-193a-3p mature miRNA
Sequence 43 - AACUGGCCUUUUAAGUCCCGCA - 64
Evidence experimental
454 [1]

Mature sko-miR-193a-5p

Accession MIMAT0019157
Description Saccoglossus kowalevskii sko-miR-193a-5p mature miRNA
Sequence 8 - CGGGAUUUGAUUGAUCAGUUC - 28
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27