Stem-loop sequence sko-mir-193a

Accession

MI0010171 (change log)

Previous IDs

sko-mir-193

Description

Saccoglossus kowalevskii miR-193a stem-loop

Stem-loop

   auu   a          uu au       ag g 
5'    guu cgggauuuga  g  caguuca  u u
      ||| ||||||||||  |  |||||||  | u
3'    uaa gcccugaauu  c  gucaagu  g u
   uug   c          uu cg       cu u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Skow_1.1; GCA_000003605.1): GL012752.1: 7651-7719 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sko-mir-193a

• sko-mir-193a: GL012752.1: 7651-7719 [+]
• sko-mir-4817: GL012752.1: 7978-8078 [-]
• sko-mir-193b: GL012752.1: 7988-8065 [+]
• sko-mir-365: GL012752.1: 8972-9058 [+]

Database links

• EntrezGene:Mir193
• EntrezGene:Mir193a
• RNAcentral:URS000075DB9E_10224
• miRBase Tracker:MI0010171

Mature sequence sko-miR-193a-5p

• Accession: MIMAT0019157
• Previous IDs: sko-miR-193a*
• Sequence: 8 - cgggauuugauugaucaguuc - 28
• Evidence: experimental; 454 [2]

Mature sequence sko-miR-193a-3p

• Accession: MIMAT0009635
• Previous IDs: sko-miR-193;sko-miR-193a
• Sequence: 43 - aacuggccuuuuaagucccgca - 64
• Evidence: experimental; 454 [1]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).