miRBase entry: sko-mir-182

Stem-loop sko-mir-182


Accession
MI0010167
Description
Saccoglossus kowalevskii sko-mir-182 precursor miRNA


Sequence

uucguugugUUUGGCAAUAGAUAGAAUUCACAcuguguacacugaucagugguucugcuuuugccaacuacagcgugu
..(((((((.(((((((.((.((((((...(((((...........))))))))))))).))))))).)))))))...

Structure
-uu       U       U  A      UCA     ugua 
   cguugug UUGGCAA AG UAGAAU   CAcug    c
   ||||||| ||||||| || ||||||   |||||    a
   gcgacau aaccguu uc gucuug   gugac    c
ugu       c       u  -      ---     uagu 


Annotation confidence Not enough data
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Genome context
GL011980.1: 37036-37113 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from sko-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-182

Accession MIMAT0009630
Description Saccoglossus kowalevskii sko-miR-182 mature miRNA
Sequence 10 - UUUGGCAAUAGAUAGAAUUCACA - 32
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68