miRBase entry: sko-mir-92c

Stem-loop sko-mir-92c


Accession
MI0010159
Description
Saccoglossus kowalevskii sko-mir-92c precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

accauggauacugguuggccauggagguuaggacuuuugcaauauuuugauauuauuuaaUAUUGCACUCGUCCCGGCCUGUauguuucaacuaacuuaca
...........(((((((.((((.(((((.((((...(((((((((............)))))))))...)))).))))).))))..))))))).......

Structure
accauggauac       -c    g     a    uuu         uugau 
           ugguugg  caug agguu ggac   ugcaauauu     a
           |||||||  |||| ||||| ||||   |||||||||      
           aucaacu  guaU UCCGG CCUG   ACGUUAUaa     u
----acauuca       uu    G     C    CUC         uuuau 


Annotation confidence Not enough data
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Genome context
GL015959.1: 40764-40864 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-92c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-92c

Accession MIMAT0009621
Description Saccoglossus kowalevskii sko-miR-92c mature miRNA
Sequence 61 - UAUUGCACUCGUCCCGGCCUGU - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68