miRBase entry: sko-mir-92b

Stem-loop sko-mir-92b


Accession
MI0010158
Description
Saccoglossus kowalevskii sko-mir-92b precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

agcuuuuuucuuuacccgagcuguaagguuaggacuuuugcaauguuguucucgucuaaUAUUGCACUUGUCCCGGCCUGCuggcuaagguuauguacaac
.............(((..((((...(((((.((((...((((((((((........))))))))))...)))).)))))...))))..)))..........

Structure
agcuuuuuucuuu   cg    gua     a    uuu          uuc 
             acc  agcu   agguu ggac   ugcaauguug   u
             |||  ||||   ||||| ||||   ||||||||||    
             ugg  ucgg   UCCGG CCUG   ACGUUAUaau   c
---caacauguau   aa    uCG     C    UUC          cug 


Annotation confidence Not enough data
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Genome context
GL015959.1: 42157-42257 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sko-mir-92b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sko-miR-92b

Accession MIMAT0009620
Description Saccoglossus kowalevskii sko-miR-92b mature miRNA
Sequence 60 - UAUUGCACUUGUCCCGGCCUGC - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68