miRBase entry: sko-mir-71

Stem-loop sko-mir-71


Accession
MI0010155
Description
Saccoglossus kowalevskii sko-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71


Sequence

gcauuacugguggguguuuugUGAAAGACACAGGUAGUGAGAUaguguaugguaaacaucucgcuacuuuggucucucuccauagcaccuugccaaaaucu
.......(((((((((((.((.((.((((..((((((((((((.((.........))))))))))))))..)))).))..)).)))))).)))))......

Structure
gcauuac     -      u  -U  A    AC            a  gua 
       uggug gguguu ug  GA AGAC  AGGUAGUGAGAU gu   u
       ||||| |||||| ||  || ||||  |||||||||||| ||   g
       accgu ccacga ac  cu ucug  uucaucgcucua ca   g
-ucuaaa     u      u  cu  c    gu            -  aau 


Annotation confidence Not enough data
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Genome context
GL016280.1: 55163-55263 [-]

Database links

Mature sko-miR-71

Accession MIMAT0009617
Description Saccoglossus kowalevskii sko-miR-71 mature miRNA
Sequence 22 - UGAAAGACACAGGUAGUGAGAU - 43
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68