miRBase entry: sko-mir-1

Stem-loop sko-mir-1


Accession
MI0010145
Description
Saccoglossus kowalevskii sko-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

gaggucucguuuacagaACGUACUUCUUUAUAAUUCCAUAccuuauucccaucuguaUGGAAUGUAAUGAAGUAUGUAUuguuagucgggaaaa
....(((((...((((.(((((((((.(((((.((((((((.............))))))))))))).))))))))).))))....)))))...

Structure
gagg     -uuu    a         U     A        cuuau 
    ucucg    acag ACGUACUUC UUAUA UUCCAUAc     u
    |||||    |||| ||||||||| ||||| ||||||||     c
    agggc    uguU UGUAUGAAG AAUGU AAGGUaug     c
-aaa     ugau    A         U     -        ucuac 


Annotation confidence Not enough data
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Genome context
GL012728.1: 111768-111861 [-]

Database links

Mature sko-miR-1-3p

Accession MIMAT0009607
Description Saccoglossus kowalevskii sko-miR-1-3p mature miRNA
Sequence 58 - UGGAAUGUAAUGAAGUAUGUAU - 79
Evidence experimental
454 [1]

Mature sko-miR-1-5p

Accession MIMAT0019152
Description Saccoglossus kowalevskii sko-miR-1-5p mature miRNA
Sequence 18 - ACGUACUUCUUUAUAAUUCCAUA - 40
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27