Stem-loop sequence sko-mir-1

Accession

MI0010145 (change log)

Description

Saccoglossus kowalevskii miR-1 stem-loop

Gene family

MIPF0000038; mir-1

Stem-loop

   gagg     -uuu    a         u     a        cuuau 
5'     ucucg    acag acguacuuc uuaua uuccauac     u
       |||||    |||| ||||||||| ||||| ||||||||     c
3'     agggc    uguu uguaugaag aaugu aagguaug     c
   -aaa     ugau    a         u     -        ucuac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Skow_1.1; GCA_000003605.1): GL012728.1: 111768-111861 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir1
• RNAcentral:URS000075DFFC_10224
• miRBase Tracker:MI0010145

Mature sequence sko-miR-1-5p

• Accession: MIMAT0019152
• Previous IDs: sko-miR-1*
• Sequence: 18 - acguacuucuuuauaauuccaua - 40
• Evidence: experimental; 454 [2]

Mature sequence sko-miR-1-3p

• Accession: MIMAT0009607
• Previous IDs: sko-miR-1
• Sequence: 58 - uggaauguaaugaaguauguau - 79
• Evidence: experimental; 454 [1]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).