miRBase entry: lgi-mir-133

Stem-loop lgi-mir-133


Accession
MI0010121
Description
Lottia gigantea lgi-mir-133 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

ugucuguAGCUGGUUGAAAUUGGGCCAAAUuagaaaaaggucaagcauUUGGUCCCCUUCAACCAGCUGUaguug
...(((((((((((((((...(((((((((..((......))....)))))))))..)))))))))))))))...

Structure
ugu               AUU         --ua  aa 
   cuguAGCUGGUUGAA   GGGCCAAAU    ga  a
   |||||||||||||||   |||||||||    ||   
   gaUGUCGACCAACUU   CCUGGUUua    cu  a
guu               -CC         cgaa  gg 


Annotation confidence Not enough data
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Genome context
KB199650.1: 5190436-5190510 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lgi-mir-133
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lgi-miR-133-5p

Accession MIMAT0009579
Description Lottia gigantea lgi-miR-133-5p mature miRNA
Sequence 8 - AGCUGGUUGAAAUUGGGCCAAAU - 30
Evidence not_experimental

Mature lgi-miR-133-3p

Accession MIMAT0009580
Description Lottia gigantea lgi-miR-133-3p mature miRNA
Sequence 49 - UUGGUCCCCUUCAACCAGCUGU - 70
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68