miRBase entry: lgi-mir-2d

Stem-loop lgi-mir-2d


Accession
MI0010102
Description
Lottia gigantea lgi-mir-2d precursor miRNA


Sequence

uaucugaaaguauuuugucccugcucugaccaaguggcugagauaaguuuauuugaaucuUAUCACAGCCUGCUUGGAUCAGUucagugucaaauauaaac
.........((((((.(.(.(((..(((((((((((((((.(((((((((....))).)))))).))))).)))))).))))..))).).)))))))....

Structure
uaucugaaa      u u c   cu    -      -     a      -   a 
         guauuu g c cug  cuga ccaagu ggcug gauaag uuu u
         |||||| | | |||  |||| |||||| ||||| |||||| |||  
         uauaaa c g gac  GACU GGUUCG CCGAC CUAUuc aag u
-----caaa      - u u   uU    A      U     A      u   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB201304.1: 4520058-4520158 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from lgi-mir-2d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lgi-miR-2d

Accession MIMAT0009559
Description Lottia gigantea lgi-miR-2d mature miRNA
Sequence 61 - UAUCACAGCCUGCUUGGAUCAGU - 83
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68