miRBase entry: lgi-mir-1

Stem-loop lgi-mir-1


Accession
MI0010100
Description
Lottia gigantea lgi-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

guaucuguaugcagacaacauacuuccuugcuaucccauauuuuauauaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuguguaugguuuu
....(((((((((((..(((((((((.((((.((.(((((.............))))).)))))).)))))))))..)))))))))))....

Structure
guau           ca         c    u  c     uuuua 
    cuguaugcaga  acauacuuc uugc au ccaua     u
    |||||||||||  ||||||||| |||| || |||||     a
    gguauguguuu  UGUAUGAAG AAUG UA GGUau     u
uuuu           UA         A    -  A     cguaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB199650.1: 5198452-5198543 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from lgi-mir-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lgi-miR-1

Accession MIMAT0009557
Description Lottia gigantea lgi-miR-1 mature miRNA
Sequence 56 - UGGAAUGUAAAGAAGUAUGUAU - 77
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68