miRBase entry: cte-let-7

Stem-loop cte-let-7


Accession
MI0010095
Description
Capitella teleta cte-let-7 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

cccccuggcuuaccuccaguUGAGGUAGUAGGUUGUAUAGUagaguuacaucacuaaacagacgaacuguacagccuucuagcuuuccugggguacagcacug
.......(((((((.((((..(((.(((.((((((((((((...(((.............)))..)))))))))))).))).)))..)))))))).)))....

Structure
cccccug   -    u    uU   G   U            aga   acauc 
       gcu uacc ccag  GAG UAG AGGUUGUAUAGU   guu     a
       ||| |||| ||||  ||| ||| ||||||||||||   |||     c
       cga augg gguc  uuc auc uccgacauguca   cag     u
---guca   c    -    cu   g   u            -ag   acaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB294122.1: 267294-267396 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cte-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-let-7

Accession MIMAT0009552
Description Capitella teleta cte-let-7 mature miRNA
Sequence 21 - UGAGGUAGUAGGUUGUAUAGU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68