miRBase entry: cte-mir-252a

Stem-loop cte-mir-252a


Accession
MI0010080
Description
Capitella teleta cte-mir-252a precursor miRNA
Gene family
MIPF0000285; mir-252


Sequence

augcucgcucauugccaaugCUAAGUACUAGUGCCGCAGGAGguuccuuguucaaccccuccugcuguucgagugcuuaauaucacauuugagcauuuccu
......(((((......(((.((((((((.(.((.((((((((..............)))))))).)).).)))))))).)))......))))).......

Structure
-augcuc     uugcca   C        A U  C        uuccuu 
       gcuca      aug UAAGUACU G GC GCAGGAGg      g
       |||||      ||| |||||||| | || ||||||||       
       cgagu      uau auucguga c ug cguccucc      u
uccuuua     uuacac   a        g u  u        ccaacu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB302014.1: 191474-191574 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cte-mir-252a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-252a

Accession MIMAT0009536
Description Capitella teleta cte-miR-252a mature miRNA
Sequence 21 - CUAAGUACUAGUGCCGCAGGAG - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68