miRBase entry: cte-mir-12

Stem-loop cte-mir-12


Accession
MI0010056
Description
Capitella teleta cte-mir-12 precursor miRNA
Gene family
MIPF0000181; mir-12


Sequence

uggaaguggcggucagagccUGAGUAUUACAUCAGGUACUGAguacaagcacgaaaucagggccugcugaaauacucgcucucugucagcacuaaucaacu
....((((..((.(((((..((((((((.((.(((((.((((...(......)...)))).))))).)).))))))))..)))))))..))))........

Structure
----ugga    gc  u     cc        A  U     A    gua aa 
        agug  gg cagag  UGAGUAUU CA CAGGU CUGA   c  g
        ||||  || |||||  |||||||| || ||||| ||||   |   
        ucac  cu gucuc  gcucauaa gu guccg gacu   g  c
ucaacuaa    ga  -     uc        a  c     g    aaa ca 


Annotation confidence Not enough data
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Genome context
KB297336.1: 33822-33922 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cte-mir-12
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cte-miR-12

Accession MIMAT0009512
Description Capitella teleta cte-miR-12 mature miRNA
Sequence 21 - UGAGUAUUACAUCAGGUACUGA - 42
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68