miRBase entry: cte-mir-9

Stem-loop cte-mir-9


Accession
MI0010052
Description
Capitella teleta cte-mir-9 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

gcaugauaaccccauuuuucUCUUUGGUUAUCUAGCUGUAUGAuuuauauuuuacuucaUAAAGCUAGGUUACCAAAGCUAaaacaggggacaaaaucuac
.........((((..((((..(((((((.((((((((.(((((..((.....))..))))).)))))))).)))))))..))))..))))...........

Structure
--gcaugauaa    au    cU       U        G     uu  u 
           cccc  uuuu  CUUUGGU AUCUAGCU UAUGA  ua a
           ||||  ||||  ||||||| |||||||| |||||  || u
           gggg  aaaA  GAAACCA UGGAUCGA AUacu  au u
caucuaaaaca    ac    UC       U        A     uc  u 


Annotation confidence Not enough data
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Genome context
KB300095.1: 129658-129758 [+]

Database links

Mature cte-miR-9-5p

Accession MIMAT0009508
Description Capitella teleta cte-miR-9-5p mature miRNA
Sequence 21 - UCUUUGGUUAUCUAGCUGUAUGA - 43
Evidence experimental
454 [1]

Mature cte-miR-9-3p

Accession MIMAT0009554
Description Capitella teleta cte-miR-9-3p mature miRNA
Sequence 60 - UAAAGCUAGGUUACCAAAGCUA - 81
Evidence not_experimental

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68