Stem-loop bfl-mir-252b

Accession

MI0010043

Description

Branchiostoma floridae bfl-mir-252b precursor miRNA

Gene family

MIPF0000285; mir-252

Sequence

gaaagcgacugucucugugCUAAGUAGUACUGCCGCAGGGAGugcuguggacugauucuaucCCCUGCGCAGUCCUACUUACAAcagggaacauuucuaau
((((.....(((((((((..(((((((.(((((.((((((.(....(((((.....))))))))))))))))).)))))))..)))))).)))))))....

Structure

----    gcgac   -      gC       U     C      A ugcu     c 
    gaaa     ugu cucugu  UAAGUAG ACUGC GCAGGG G    gugga u
    ||||     ||| ||||||  ||||||| ||||| |||||| |    ||||| g
    cuuu     aca gggacA  AUUCAUC UGACG CGUCCC c    uaucu a
uaau    -----   a      AC       C     -      - ----     u 

Annotation confidence Not enough data

Genome context

GG666517.1: 1038237-1038337 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bfl-mir-252b

Mature bfl-miR-252b-5p

• Accession: MIMAT0009499
• Description: Branchiostoma floridae bfl-miR-252b-5p mature miRNA
• Sequence: 20 - CUAAGUAGUACUGCCGCAGGGAG - 42
• Evidence: experimental ; 454 [1]

Mature bfl-miR-252b-3p

• Accession: MIMAT0019151
• Description: Branchiostoma floridae bfl-miR-252b-3p mature miRNA
• Sequence: 63 - CCCUGCGCAGUCCUACUUACAA - 84
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27