Stem-loop sequence bfl-mir-125a

Accession

MI0010027 (change log)

Previous IDs

bfl-mir-125

Description

Branchiostoma floridae miR-125a stem-loop

Gene family

MIPF0000033; mir-10

Stem-loop

   ---aucuguu       -  -    -     u    c            u  c 
5'           ggugugu uc ccca uuccc gaga ccuaacuuguga gu c
             ||||||| || |||| ||||| |||| |||||||||||| || a
3'           ccgcaua ag gggu gaggg uucu ggauuggacacu cg u
   acuucaccuc       c  u    c     -    a            -  g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666478.1: 2707548-2707648 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-125a

• bfl-mir-100: GG666478.1: 2705733-2705832 [+]
• bfl-let-7a-1: GG666478.1: 2706001-2706082 [+]
• bfl-let-7b: GG666478.1: 2706003-2706084 [-]
• bfl-mir-125a: GG666478.1: 2707548-2707648 [+]
• bfl-mir-125b: GG666478.1: 2707563-2707644 [-]
• bfl-let-7a-2: GG666478.1: 2707847-2707945 [+]

Database links

• miRBase Tracker:MI0010027

Mature sequence bfl-miR-125a-5p

• Accession: MIMAT0009483
• Previous IDs: bfl-miR-125;bfl-miR-125a
• Sequence: 22 - ucccugagacccuaacuuguga - 43
• Evidence: experimental; 454 [1]

Mature sequence bfl-miR-125a-3p

• Accession: MIMAT0019147
• Previous IDs: bfl-miR-125a*
• Sequence: 56 - acagguuaggaucuugggagcu - 77
• Evidence: experimental; 454 [2]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).