Stem-loop bfl-mir-125a

Accession

MI0010027

Description

Branchiostoma floridae bfl-mir-125a precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

aucuguugguguguuccccauUCCCUGAGACCCUAACUUGUGAuguccauggcucACAGGUUAGGAUCUUGGGAGCUgggugacauacgcccuccacuuca
.......((((((((((((((((((.((((.((((((((((((.(((...))))))))))))))).))))))))).)))).)).)))))))..........

Structure

---aucuguu       -  -    -     U    C            u   c 
          ggugugu uc ccca uUCCC GAGA CCUAACUUGUGA guc  
          ||||||| || |||| ||||| |||| |||||||||||| ||| a
          ccgcaua ag gggU GAGGG UUCU GGAUUGGACAcu cgg  
acuucaccuc       c  u    C     -    A            -   u 

Annotation confidence Not enough data

Genome context

GG666478.1: 2707548-2707648 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bfl-mir-125a

Mature bfl-miR-125a-5p

• Accession: MIMAT0009483
• Description: Branchiostoma floridae bfl-miR-125a-5p mature miRNA
• Sequence: 22 - UCCCUGAGACCCUAACUUGUGA - 43
• Evidence: experimental ; 454 [1]

Mature bfl-miR-125a-3p

• Accession: MIMAT0019147
• Description: Branchiostoma floridae bfl-miR-125a-3p mature miRNA
• Sequence: 56 - ACAGGUUAGGAUCUUGGGAGCU - 77
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27