Stem-loop sequence bfl-mir-100

AccessionMI0010025 (change log)
DescriptionBranchiostoma floridae miR-100 stem-loop
Gene family MIPF0000033; mir-10
Stem-loop 
   ----    aaa   -g c  c    a         uc   a      uu  u 
5'     agau   gcc  g ug caua acccguaga  cga cuugug  gc u
       ||||   |||  | || |||| |||||||||  ||| ||||||  ||  
3'     ucua   cgg  c ac guau uggguaucu  gcu gaacac  ug c
   cacg    caa   ga u  u    c         gu   c      -u  a
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (JGI2; GCF_000003815.1) Overlapping transcripts
GG666478.1: 2705733-2705832 [+]
intergenic
Clustered miRNAs
< 10kb from bfl-mir-100
bfl-mir-100GG666478.1: 2705733-2705832 [+]
bfl-let-7a-1GG666478.1: 2706001-2706082 [+]
bfl-let-7bGG666478.1: 2706003-2706084 [-]
bfl-mir-125aGG666478.1: 2707548-2707648 [+]
bfl-mir-125bGG666478.1: 2707563-2707644 [-]
bfl-let-7a-2GG666478.1: 2707847-2707945 [+]
Database links

Mature sequence bfl-miR-100-5p

Accession MIMAT0009481
Previous IDsbfl-miR-100
Sequence

21 -  

aacccguagauccgaacuugugu

 - 43

Get sequence
Evidence experimental; 454 [1]

Mature sequence bfl-miR-100-3p

Accession MIMAT0019145
Previous IDsbfl-miR-100*
Sequence

56 -  

caagcucgugucuaugggucu

 - 76

Get sequence
Evidence experimental; 454 [2]

References

1
PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2
PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).