Stem-loop sequence bfl-mir-96

Accession

MI0010024 (change log)

Description

Branchiostoma floridae miR-96 stem-loop

Gene family

MIPF0000072; mir-96

Stem-loop

   --ccug  -u     uu   c               c     u   gg   g 
5'       cc  cuuuc  gcu uguuuggcacuagca auuuu gcu  gca g
         ||  |||||  ||| ||||||||||||||| ||||| |||  |||  
3'       gg  gaaag  cga auaaaccgugauugu uaaaa cgg  ugu u
   cauuca  cc     uc   c               -     c   -a   g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666602.1: 1109798-1109898 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-96

• bfl-mir-183: GG666602.1: 1108717-1108817 [+]
• bfl-mir-96: GG666602.1: 1109798-1109898 [+]

Database links

• miRBase Tracker:MI0010024

Mature sequence bfl-miR-96-5p

• Accession: MIMAT0009480
• Previous IDs: bfl-miR-96
• Sequence: 21 - uuuggcacuagcacauuuuugcu - 43
• Evidence: experimental; 454 [1]

Mature sequence bfl-miR-96-3p

• Accession: MIMAT0019144
• Previous IDs: bfl-miR-96*
• Sequence: 59 - ccaaaauuguuagugccaaau - 79
• Evidence: experimental; 454 [2]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).