Stem-loop sequence bfl-mir-71

Accession

MI0010020 (change log)

Description

Branchiostoma floridae miR-71 stem-loop

Gene family

MIPF0000278; mir-71

Stem-loop

   -    uag      c   a    -        u   u    a   uu  au 
5'  gcua   uugcca cac uugu gaaagaca ggg agug gau  gu  c
    ||||   |||||| ||| |||| |||||||| ||| |||| |||  ||  a
3'  cgau   gacggu gug aaca cuuucugu ccc uuac cua  ua  u
   a    -uu      u   g    a        -   u    c   uu  ag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666603.1: 5824839-5824939 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-71

• bfl-mir-71: GG666603.1: 5824839-5824939 [-]
• bfl-mir-4890: GG666603.1: 5823503-5823593 [-]

Database links

• miRBase Tracker:MI0010020

Mature sequence bfl-miR-71-5p

• Accession: MIMAT0009476
• Previous IDs: bfl-miR-71
• Sequence: 22 - ugaaagacauggguagugagau - 43
• Evidence: experimental; 454 [1]

Mature sequence bfl-miR-71-3p

• Accession: MIMAT0019142
• Previous IDs: bfl-miR-71*
• Sequence: 61 - cccauuucccugucuuucaaca - 82
• Evidence: experimental; 454 [2]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).