miRBase entry: bfl-mir-71

Stem-loop bfl-mir-71


Accession
MI0010020
Description
Branchiostoma floridae bfl-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71


Sequence

gcuauaguugccaccacauugUGAAAGACAUGGGUAGUGAGAUuuguaucaugaauuuauCCCAUUUCCCUGUCUUUCAACAagguguuggcaguuuagca
((((.((((((((.(((.((((((((((((.(((.((((.(((...............))).)))).))))))))))).)))).))).)))))))))))).

Structure
-    u        c   a    -        U   U    A   uuguau 
 gcua aguugcca cac uugU GAAAGACA GGG AGUG GAU      c
 |||| |||||||| ||| |||| |||||||| ||| |||| |||      a
 cgau uugacggu gug aACA CUUUCUGU CCC UUAC Cua      u
a    -        u   g    A        -   U    C   uuuaag 


Annotation confidence Not enough data
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Genome context
GG666603.1: 5824839-5824939 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bfl-mir-71
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-71-5p

Accession MIMAT0009476
Description Branchiostoma floridae bfl-miR-71-5p mature miRNA
Sequence 22 - UGAAAGACAUGGGUAGUGAGAU - 43
Evidence experimental
454 [1]

Mature bfl-miR-71-3p

Accession MIMAT0019142
Description Branchiostoma floridae bfl-miR-71-3p mature miRNA
Sequence 61 - CCCAUUUCCCUGUCUUUCAACA - 82
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27