Stem-loop sequence bfl-mir-31

Accession

MI0010017 (change log)

Description

Branchiostoma floridae miR-31 stem-loop

Gene family

MIPF0000064; mir-31

Stem-loop

   -----ugac    --g   a          aga   ug         -  ug a 
5'          ggag   gcg ggaaauggca   ugu  gcauagcug uu  g g
            ||||   ||| ||||||||||   |||  ||||||||| ||  |  
3'          ccuc   ugc ccuuuaccgu   aca  cgugucggc gg  c u
   caacauuau    acu   -          caa   gu         u  gu u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666694.1: 268453-268553 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010017

Mature sequence bfl-miR-31-5p

• Accession: MIMAT0009473
• Previous IDs: bfl-miR-31
• Sequence: 19 - uggcaagauguuggcauagcugu - 41
• Evidence: experimental; 454 [1]

Mature sequence bfl-miR-31-3p

• Accession: MIMAT0019141
• Previous IDs: bfl-miR-31*
• Sequence: 59 - cugugcugacaaacugccauuu - 80
• Evidence: experimental; 454 [2]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).
2. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).