Stem-loop sequence bfl-let-7a-2

Accession

MI0010007 (change log)

Previous IDs

bfl-let-7-2

Description

Branchiostoma floridae let-7a-2 stem-loop

Gene family

MIPF0000002; let-7

Stem-loop

   agacac g    a  ug   u   g                  agaagua  u 
5'       g gugc cc  agg gag uaguagguuguauaguug       ca c
         | |||| ||  ||| ||| ||||||||||||||||||       ||  
3'       c uacg gg  ucc cuc aucguccaacgugucaau       gu a
   -----c g    -  gu   u   g                  ---agag  u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666478.1: 2707847-2707945 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-let-7a-2

• bfl-mir-100: GG666478.1: 2705733-2705832 [+]
• bfl-let-7a-1: GG666478.1: 2706001-2706082 [+]
• bfl-let-7b: GG666478.1: 2706003-2706084 [-]
• bfl-mir-125a: GG666478.1: 2707548-2707648 [+]
• bfl-mir-125b: GG666478.1: 2707563-2707644 [-]
• bfl-let-7a-2: GG666478.1: 2707847-2707945 [+]

Database links

• miRBase Tracker:MI0010007

Mature sequence bfl-let-7a-5p

• Accession: MIMAT0009462
• Previous IDs: bfl-let-7;bfl-let-7a
• Sequence: 21 - ugagguaguagguuguauaguu - 42
• Evidence: experimental; cloned [1]

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).