miRBase entry: bfl-let-7a-2

Stem-loop bfl-let-7a-2


Accession
MI0010007
Description
Branchiostoma floridae bfl-let-7a-2 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

agacacgggugcaccugaggUGAGGUAGUAGGUUGUAUAGUUgagaaguacaucauuggagauaacugugcaaccugcuagcucuccuuggggcaugcc
......(.((((.(((((((.(((.((((((((((((((((((.......((....))....)))))))))))))))))).))).))))))))))).).

Structure
agacac g    a       U   G                  agaagua  u 
      g gugc ccugagg GAG UAGUAGGUUGUAUAGUUg       ca c
      | |||| ||||||| ||| ||||||||||||||||||       ||  
      c uacg ggguucc cuc aucguccaacgugucaau       gu a
-----c g    -       u   g                  ---agag  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GG666478.1: 2707847-2707945 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bfl-let-7a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-let-7a-5p

Accession MIMAT0009462
Description Branchiostoma floridae bfl-let-7a-5p mature miRNA
Sequence 21 - UGAGGUAGUAGGUUGUAUAGUU - 42
Evidence experimental
cloned [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68