Stem-loop sequence bmo-mir-285

Accession

MI0009997 (change log)

Description

Bombyx mori miR-285 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

2 open access papers mention bmo-mir-285
(2 sentences)

Stem-loop

   ugu        u  ca    u         u   ga    uu u 
5'    ccauguuu ga  acug auucgagug gug  agag  u a
      |||||||| ||  |||| ||||||||| |||  ||||  | a
3'    ggugcaag cu  ugac uaagcuuac cac  ucuc  a a
   auu        -  cg    u         -   ga    cu a 

Deep sequencing

107 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582025.1: 2320232-2320320 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0009997

Mature sequence bmo-miR-285

• Accession: MIMAT0009154
• Sequence: 55 - uagcaccauucgaauucagugc - 76
• Deep sequencing: 105 reads, 3 experiments
• Evidence: experimental; cloned [1], Illumina [2]
• Database links:
  • RNAcentral:URS00000360F3_7091

References

1. PMID:18714353 "The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages" Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J PLoS One. 3:e2997(2008).
2. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).