miRBase entry: bmo-mir-190

Stem-loop bmo-mir-190


Accession
MI0009996
Description
Bombyx mori bmo-mir-190 precursor miRNA
Gene family
MIPF0000076; mir-190

Literature search
1 open access papers mention bmo-mir-190
(3 sentences)

Sequence

4138 reads, 721 reads per million, 3 experiments
gagccgcgcgucgucgAGAUAUGUUUGAUAUUCUUGGUUguuuguuuuggaucaCCCGGGAAUCAAACAUAUUACUCUacgaccgcggcc
..((((((.(((((.((((((((((((((..((((((.((.((......)).)).)))))))))))))))))..))).))))))))))).

Structure
ga      c     c   --           AU      U  u  gu 
  gccgcg gucgu gAG  AUAUGUUUGAU  UCUUGG Ug uu  u
  |||||| ||||| |||  |||||||||||  |||||| || ||   
  cggcgc cagca CUC  UAUACAAACUA  AGGGCC ac ag  u
-c      -     U   AU           --      C  u  gu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
NW_004581767.1: 450675-450764 [+]

Database links

Mature bmo-miR-190-5p

Accession MIMAT0009153
Description Bombyx mori bmo-miR-190-5p mature miRNA
Sequence 17 - AGAUAUGUUUGAUAUUCUUGGUU - 39
Evidence experimental
RT-PCR [2], Illumina [3]
Database links

Mature bmo-miR-190-3p

Accession MIMAT0015287
Description Bombyx mori bmo-miR-190-3p mature miRNA
Sequence 55 - CCCGGGAAUCAAACAUAUUACUCU - 78
Evidence experimental
Illumina [3]
Database links

References

  1. PubMed ID: 18977439
    Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
    "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
    "Insect Biochem Mol Biol (2008) 38:1066-1071

  2. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  3. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997