Stem-loop sequence mmu-mir-1839

Accession

MI0009991 (change log)

Symbol

MGI:Mir1839

Description

Mus musculus miR-1839 stem-loop

Gene family

MIPF0000702; mir-1839

Literature search

5 open access papers mention mmu-mir-1839
(17 sentences)

Stem-loop

   ---------gaaaa         aac        uu gca 
5'               gguagauag   aggucuug  u   a
                 |||||||||   ||||||||  |   a
3'               ccaucuauu   uccagaac  a   a
   uccguuaccgacaa         -ca        uu aau 

Deep sequencing

1214067 reads, 2.23e+03 reads per million, 109 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

This sequence was named mmu-mir-1980 in [1], but is a clear ortholog of the mir-1839 sequence published in dog (MI0008087), so is renamed here.

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 81529916-81529988 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000112761 ; WI1-1616M8.2-004; exon 2

  OTTMUST00000112763 ; WI1-1616M8.2-003; intron 3

  OTTMUST00000112767 ; WI1-1616M8.2-001; intron 3

  ENSMUST00000175366 ; Mir1839-201; exon 1

  ENSMUST00000180385 ; 2900076A07Rik-004; exon 2

  ENSMUST00000181492 ; 2900076A07Rik-001; intron 3

  ENSMUST00000180879 ; 2900076A07Rik-003; intron 3

Database links

• EntrezGene:Mir1839
• MGI:Mir1839
• RNAcentral:URS000075B089_10090
• miRBase Tracker:MI0009991

Mature sequence mmu-miR-1839-5p

• Accession: MIMAT0009456
• Sequence: 4 - aagguagauagaacaggucuug - 25
• Deep sequencing: 1209914 reads, 109 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS00005916FD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1839-5p
  • miRDB:mmu-miR-1839-5p
  • microrna.org:mmu-miR-1839-5p

Mature sequence mmu-miR-1839-3p

• Accession: MIMAT0009457
• Sequence: 43 - agaccuacuuaucuaccaacagc - 65
• Deep sequencing: 4149 reads, 102 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000036CE6D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1839-3p
  • miRDB:mmu-miR-1839-3p
  • microrna.org:mmu-miR-1839-3p

References

1. PMID:18923076 "Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs" Babiarz JE, Ruby JG, Wang Y, Bartel DP, Blelloch R Genes Dev. 22:2773-2785(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).