Stem-loop sequence mmu-mir-1971

Accession

MI0009970 (change log)

Symbol

MGI:Mir1971

Description

Mus musculus miR-1971 stem-loop

Literature search

2 open access papers mention mmu-mir-1971
(25 sentences)

Stem-loop

   gcaucauuugguaa   c          ---     ucu       a    ccc      u  g 
5'               agg ugggcugaga   ggaca   uuguucc ugga   aguaga ag c
                 ||| ||||||||||   |||||   ||||||| ||||   |||||| ||  
3'               ucu aucugacuuu   ucugu   aacaagg accu   ucgucu uc a
   --------------   -          uug     -uc       -    ---      -  g 

Deep sequencing

61522 reads, 122 reads per million, 104 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr14: 78191373-78191478 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir1971
• MGI:Mir1971
• miRBase Tracker:MI0009970

Mature sequence mmu-miR-1971

• Accession: MIMAT0009446
• Sequence: 11 - guaaaggcugggcugaga - 28
• Deep sequencing: 61502 reads, 102 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-1971
  • miRDB:mmu-miR-1971
  • microrna.org:mmu-miR-1971

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).