Stem-loop sequence mmu-mir-1306

AccessionMI0009935 (change log)
Symbol MGI:Mir1306
DescriptionMus musculus miR-1306 stem-loop
Gene family MIPF0000531; mir-1306
Literature search

8 open access papers mention mmu-mir-1306
(27 sentences)

   ----ca    -c       uccccu  a        guga   a 
5'       gucu  caccacc      gc aacgucca    ugc g
         ||||  |||||||      || ||||||||    |||  
3'       cagg  guggugg      cg uugcaggu    aug a
   gccuga    ua       ---ucu  g        ---a   g 
Get sequence
Deep sequencing
12199 reads, 18.9 reads per million, 106 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr16: 18284239-18284317 [-]
OTTMUST00000057894 ; Dgcr8-003; exon 1
OTTMUST00000057892 ; Dgcr8-001; exon 2
OTTMUST00000057893 ; Dgcr8-002; exon 3
ENSMUST00000128856 ; Dgcr8-003; exon 1
ENSMUST00000116802 ; Mir1306-201; exon 1
ENSMUST00000009321 ; Dgcr8-001; exon 2
ENSMUST00000115633 ; Dgcr8-002; exon 3
Clustered miRNAs
< 10kb from mmu-mir-1306
mmu-mir-3618chr16: 18284550-18284637 [-]
mmu-mir-1306chr16: 18284239-18284317 [-]
Database links

Mature sequence mmu-miR-1306-5p

Accession MIMAT0019136

8 - 


 - 30

Get sequence
Deep sequencing5497 reads, 105 experiments
Evidence experimental; Illumina [3]
Database links
Predicted targets

Mature sequence mmu-miR-1306-3p

Accession MIMAT0009411
Previous IDsmmu-miR-1306

50 - 


 - 70

Get sequence
Deep sequencing6663 reads, 92 experiments
Evidence experimental; Illumina [1-3]
Database links
Predicted targets


PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).
PMID:20935160 "Next-generation sequencing identifies the natural killer cell microRNA transcriptome" Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER Genome Res. 20:1590-1604(2010).