Stem-loop sequence mmu-mir-1306

Accession

MI0009935 (change log)

Symbol

MGI:Mir1306

Description

Mus musculus miR-1306 stem-loop

Gene family

MIPF0000531; mir-1306

Literature search

8 open access papers mention mmu-mir-1306
(27 sentences)

Stem-loop

   ----ca    -c       uccccu  a        guga   a 
5'       gucu  caccacc      gc aacgucca    ugc g
         ||||  |||||||      || ||||||||    |||  
3'       cagg  guggugg      cg uugcaggu    aug a
   gccuga    ua       ---ucu  g        ---a   g 

Deep sequencing

12199 reads, 18.9 reads per million, 106 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr16: 18284239-18284317 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000057894 ; Dgcr8-003; exon 1

  OTTMUST00000057892 ; Dgcr8-001; exon 2

  OTTMUST00000057893 ; Dgcr8-002; exon 3

  ENSMUST00000128856 ; Dgcr8-003; exon 1

  ENSMUST00000116802 ; Mir1306-201; exon 1

  ENSMUST00000009321 ; Dgcr8-001; exon 2

  ENSMUST00000115633 ; Dgcr8-002; exon 3

Clustered miRNAs

< 10kb from mmu-mir-1306

• mmu-mir-3618: chr16: 18284550-18284637 [-]
• mmu-mir-1306: chr16: 18284239-18284317 [-]

Database links

• EntrezGene:Mir1306
• MGI:Mir1306
• RNAcentral:URS000075EDCD_10090
• miRBase Tracker:MI0009935

Mature sequence mmu-miR-1306-5p

• Accession: MIMAT0019136
• Sequence: 8 - caccaccuccccugcaaacgucc - 30
• Deep sequencing: 5497 reads, 105 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00000228BF_10090
• Predicted targets:
  • miRDB:mmu-miR-1306-5p

Mature sequence mmu-miR-1306-3p

• Accession: MIMAT0009411
• Previous IDs: mmu-miR-1306
• Sequence: 50 - acguuggcucugguggugaug - 70
• Deep sequencing: 6663 reads, 92 experiments
• Evidence: experimental; Illumina [1-3]
• Database links:
  • RNAcentral:URS00001E5797_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1306-3p
  • miRDB:mmu-miR-1306-3p
  • microrna.org:mmu-miR-1306-3p

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).
3. PMID:20935160 "Next-generation sequencing identifies the natural killer cell microRNA transcriptome" Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER Genome Res. 20:1590-1604(2010).