Stem-loop sequence mmu-mir-1943

Accession

MI0009932 (change log)

Symbol

MGI:Mir1943

Description

Mus musculus miR-1943 stem-loop

Literature search

3 open access papers mention mmu-mir-1943
(3 sentences)

Stem-loop

   --                u    g      gac   cu 
5'   ggcugggaagggagga cugg caccug   cag  c
     |||||||||||||||| |||| ||||||   |||  c
3'   cugacccuucccuccu gacc guggac   guc  u
   ca                c    -      ---   cc 

Deep sequencing

4226 reads, 4.6 reads per million, 87 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr15: 79375228-79375300 [-]
• Overlapping transcripts:

  sense

  ENSMUST00000074991 ; Tmem184b-201; intron 3

  ENSMUST00000178522 ; Tmem184b-202; intron 3

Database links

• EntrezGene:Mir1943
• MGI:Mir1943
• RNAcentral:URS0000759E3B_10090
• miRBase Tracker:MI0009932

Mature sequence mmu-miR-1943-5p

• Accession: MIMAT0009408
• Previous IDs: mmu-miR-1943
• Sequence: 8 - aagggaggaucugggcaccugga - 30
• Deep sequencing: 4006 reads, 85 experiments
• Evidence: experimental; Illumina [1-2]
• Database links:
  • RNAcentral:URS000052429C_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1943-5p
  • miRDB:mmu-miR-1943-5p
  • microrna.org:mmu-miR-1943-5p

Mature sequence mmu-miR-1943-3p

• Accession: MIMAT0017342
• Previous IDs: mmu-miR-1943*
• Sequence: 45 - caggugccagcuccucccuuc - 65
• Deep sequencing: 218 reads, 46 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003E265D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1943-3p
  • miRDB:mmu-miR-1943-3p

References

1. PMID:18849523 "In-depth characterization of the microRNA transcriptome in a leukemia progression model" Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK Genome Res. 18:1787-1797(2008).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).