Stem-loop sequence bta-mir-9-2

AccessionMI0009913 (change log)
DescriptionBos taurus miR-9-2 stem-loop
Gene family MIPF0000014; mir-9
Literature search

18 open access papers mention bta-mir-9-2
(32 sentences)

Stem-loop 
   g    c     g   uc               g      ug a 
5'  gaag gaguu uua  uuugguuaucuagcu uaugag  u u
    |||| ||||| |||  ||||||||||||||| ||||||  |  
3'  cuuc cucaa aau  aagccaauagaucga auacuu  g u
   a    -     a   ga               a      cu g
Get sequence
Deep sequencing
14070 reads, 45.5 reads per million, 66 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr7: 90950499-90950585 [-]
intergenic
Database links

Mature sequence bta-miR-9

Accession MIMAT0009389
Sequence

16 -  

ucuuugguuaucuagcuguaug

 - 37

Get sequence
Deep sequencing37708 reads, 66 experiments
Evidence experimental;

Mature sequence bta-miR-9-3p

Accession MIMAT0012549
Previous IDsbta-miR-9*
Sequence

53 -  

auaaagcuagauaaccg

 - 69

Get sequence
Deep sequencing2832 reads, 59 experiments
Evidence experimental; cloned [4]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19267191 "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning" Long JE, Chen HX Biochem Genet. 47:329-343(2009).
4
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).