Stem-loop sequence bta-mir-9-1

Accession

MI0009912 (change log)

Description

Bos taurus miR-9-1 stem-loop

Gene family

MIPF0000014; mir-9

Literature search

18 open access papers mention bta-mir-9-1
(32 sentences)

Stem-loop

   g    cc       -  c               g     gu  ca 
5'  gagg  cguuucu cu uuugguuaucuagcu uauga  gc  c
    ||||  ||||||| || ||||||||||||||| |||||  ||   
3'  cucu  guaaaga ga aagccaauagaucga auacu  cg  a
   a    ca       u  -               a     gc  ag 

Deep sequencing

14066 reads, 45.5 reads per million, 66 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr21: 21326580-21326669 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000047900 ; RLBP1-201; intron 5

Database links

• EntrezGene:MIR9-1
• RNAcentral:URS000075D147_9913
• miRBase Tracker:MI0009912

Mature sequence bta-miR-9

• Accession: MIMAT0009389
• Sequence: 16 - ucuuugguuaucuagcuguaug - 37
• Deep sequencing: 37708 reads, 66 experiments
• Evidence: experimental

Mature sequence bta-miR-9-3p

• Accession: MIMAT0012549
• Previous IDs: bta-miR-9*
• Sequence: 55 - auaaagcuagauaaccg - 71
• Deep sequencing: 2832 reads, 59 experiments
• Evidence: experimental; cloned [4]
• Predicted targets:
  • TargetScanVert:bta-miR-9-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19267191 "Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning" Long JE, Chen HX Biochem Genet. 47:329-343(2009).
4. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).