miRBase entry: bta-mir-96

Stem-loop bta-mir-96


Accession
MI0009911
Description
Bos taurus bta-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96

Literature search
7 open access papers mention bta-mir-96
(26 sentences)

Sequence

671 reads, 130 reads per million, 70 experiments
ccacuaccgucugcuuggccgacUUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagcaaucaugugcagugccaauaugggaaaagcaggaugc
.......(((((((((..((.(..((((((((.((((((..(((((((((......)))...))))))..))))))))))))))..).))..))))).)))).

Structure
ccacuac    -     gg  g cU        A      UU      ---   uc 
       cguc ugcuu  cc a  UUGGCACU GCACAU  UUGCUu   gug  u
       |||| |||||  || |  |||||||| ||||||  ||||||   |||   
       guag acgaa  gg u  aaccguga cgugua  aacgag   cgc  c
------c    g     aa  g au        -      cu      ucu   cu 


Annotation confidence Not enough data
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Genome context
chr4: 94724422-94724524 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-96

Accession MIMAT0009388
Description Bos taurus bta-miR-96 mature miRNA
Sequence 24 - UUUGGCACUAGCACAUUUUUGCU - 46
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125