Stem-loop sequence bta-mir-92a-1

Accession

MI0009905 (change log)

Previous IDs

bta-mir-92a

Description

Bos taurus miR-92a-1 stem-loop

Gene family

MIPF0000013; mir-25

Literature search

30 open access papers mention bta-mir-92a-1
(64 sentences)

Stem-loop

   ---cu   uac            c   u           uu 
5'      uuc   acagguugggau ggu gcaaugcugug  u
        |||   |||||||||||| ||| |||||||||||   
3'      gag   uguccggcccug uca cguuaugguau  c
   gguuu   --u            u   -           gu 

Deep sequencing

1149781 reads, 1.01e+04 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr12: 66421937-66422014 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000042181 ; bta-mir-92a-1-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-92a-1

• bta-mir-17: chr12: 66421236-66421319 [+]
• bta-mir-18a: chr12: 66421379-66421449 [+]
• bta-mir-19a: chr12: 66421518-66421599 [+]
• bta-mir-20a: chr12: 66421687-66421757 [+]
• bta-mir-19b: chr12: 66421815-66421901 [+]
• bta-mir-92a-1: chr12: 66421937-66422014 [+]

Database links

• EntrezGene:MIR92A
• RNAcentral:URS00002B6637_9913
• miRBase Tracker:MI0009905

Mature sequence bta-miR-92a

• Accession: MIMAT0009383
• Sequence: 48 - uauugcacuugucccggccugu - 69
• Deep sequencing: 2284771 reads, 77 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetScanVert:bta-miR-92a

References

1. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
2. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).