miRBase entry: bta-mir-874

Stem-loop bta-mir-874


Accession
MI0009900
Description
Bos taurus bta-mir-874 precursor miRNA
Gene family
MIPF0000401; mir-874

Literature search
6 open access papers mention bta-mir-874
(18 sentences)

Sequence

1751 reads, 48 reads per million, 69 experiments
uuagcccugcggccccacgcaccaggguaagagagacucacuucCUGCCCUGGCCCGAGGGACCGAcuggcugggc
((((((...(((.(((.((..((((((((.(((........))).))))))))..)).))).)))...))))))..

Structure
--      cug   c   a  ca        a   aga 
  uuagcc   cgg ccc cg  ccagggua gag   c
  ||||||   ||| ||| ||  |||||||| |||    
  ggucgg   GCC GGG GC  GGUCCCGU cuu   u
cg      ucA   A   A  CC        C   cac 


Annotation confidence High
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Genome context
chr7: 50886238-50886313 [-]

Database links

Mature bta-miR-874

Accession MIMAT0009378
Description Bos taurus bta-miR-874 mature miRNA
Sequence 45 - CUGCCCUGGCCCGAGGGACCGA - 66
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125