miRBase entry: bta-mir-654

Stem-loop bta-mir-654


Accession
MI0009881
Description
Bos taurus bta-mir-654 precursor miRNA
Gene family
MIPF0000409; mir-654

Literature search
1 open access papers mention bta-mir-654
(13 sentences)

Sequence

379 reads, 17 reads per million, 59 experiments
ggguuaguggaaagguggugggcugcagaacaugugcuuccuucgugucaUAUGUCUGCUGACCAUCACCUUuagaagccc
(((((.....(((((((((((...(((((.(((((((.........).)))))))))))...)))))))))))...)))))

Structure
     agugg           gcu     a      - uuc 
ggguu     aaagguggugg   gcaga caugug c   c
|||||     |||||||||||   ||||| |||||| |   u
cccga     uUUCCACUACC   CGUCU GUAUac g   u
     --aga           AGU     -      u ugc 


Annotation confidence Not enough data
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Genome context
chr21: 67857212-67857292 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from bta-mir-654
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-654

Accession MIMAT0009359
Description Bos taurus bta-miR-654 mature miRNA
Sequence 51 - UAUGUCUGCUGACCAUCACCUU - 72
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125