miRBase entry: bta-mir-653

Stem-loop bta-mir-653


Accession
MI0009880
Description
Bos taurus bta-mir-653 precursor miRNA
Gene family
MIPF0000435; mir-653

Literature search
1 open access papers mention bta-mir-653
(1 sentences)

Sequence

3 reads, 2 reads per million, 3 experiments
ucauucccucaGUGUUGAAACAAUCUCUGUUGaaccauguuacaggaaguucacuggaguuuguuucaacauuggaggaaugauaagaug
(((((((.(((((((((((((((.(((((.(((((.............))))).))))).))))))))))))))).))))))).......

Structure
-------       c               U     U     caugu 
       ucauucc ucaGUGUUGAAACAA CUCUG UGaac     u
       ||||||| ||||||||||||||| ||||| |||||     a
       aguaagg gguuacaacuuuguu gaggu acuug     c
guagaau       a               u     c     aagga 


Annotation confidence Not enough data
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Genome context
chr4: 10717971-10718060 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-653
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-653

Accession MIMAT0009358
Description Bos taurus bta-miR-653 mature miRNA
Sequence 12 - GUGUUGAAACAAUCUCUGUUG - 32
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125