miRBase entry: bta-mir-502b

Stem-loop bta-mir-502b


Accession
MI0009854
Description
Bos taurus bta-mir-502b precursor miRNA
Gene family
MIPF0000139; mir-500

Literature search
2 open access papers mention bta-mir-502b
(3 sentences)

Sequence

372 reads, 61 reads per million, 66 experiments
gcuccccucucuaauucuugcuccccaggugagagugcuuugugaaugcAAUCCACCUGGGCAAGGAUUCugaaugugagagc
((((.((..((.(((((((((...(((((((.((.(((.........))).))))))))))))))))))..))..).).))))

Structure
    c - uc  -u         ucc       a  g   uuu 
gcuc c c  uc  aauucuugc   ccaggug ga ugc   g
|||| | |  ||  |||||||||   ||||||| || |||   u
cgag g g  ag  UUAGGAACG   GGUCCAC CU Acg   g
    a u ua  uC         ---       -  A   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 93946864-93946946 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-502b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-502b

Accession MIMAT0009339
Description Bos taurus bta-miR-502b mature miRNA
Sequence 50 - AAUCCACCUGGGCAAGGAUUC - 70
Evidence not_experimental

References

  1. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125