miRBase entry: bta-mir-502a-2

Stem-loop bta-mir-502a-2


Accession
MI0009853
Description
Bos taurus bta-mir-502a-2 precursor miRNA
Gene family
MIPF0000139; mir-500

Literature search
2 open access papers mention bta-mir-502a-2
(2 sentences)

Sequence

209 reads, 125 reads per million, 55 experiments
cugcucuguuccccuguauccaaucuuaaugcccagaugcagguacugucucagugcAAUGCACCUGGGCAAGGAUUCAcagaagauaag
.....((..((..((((....((((((..(((((((.((((.((((((...))))))..)))).))))))))))))).))))..))..))

Structure
cugcu  gu  cc    aucc      aa       a    -g      u 
     cu  uc  cugu    aaucuu  ugcccag ugca  guacug  
     ||  ||  ||||    ||||||  ||||||| ||||  |||||| c
     ga  ag  gacA    UUAGGA  ACGGGUC ACGU  cgugac  
-----  au  aa    ---C      --       C    AA      u 


Annotation confidence Not enough data
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Genome context
chrX: 93942730-93942819 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from bta-mir-502a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-502a

Accession MIMAT0009338
Description Bos taurus bta-miR-502a mature miRNA
Sequence 58 - AAUGCACCUGGGCAAGGAUUCA - 79
Evidence not_experimental

References

  1. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125