Stem-loop sequence bta-mir-502a-1

Accession

MI0009852 (change log)

Description

Bos taurus miR-502a-1 stem-loop

Gene family

MIPF0000139; mir-500

Literature search

2 open access papers mention bta-mir-502a-1
(2 sentences)

Stem-loop

   u        -    -           ucu      uag   -  u 
5'  gcccaccc cucu aauccuugcuc   gggugc   ugc ug c
    |||||||| |||| |||||||||||   ||||||   ||| ||  
3'  cggguggg gaga uuaggaacggg   uccacg   acg ac u
   u        a    c           ---      -ua   u  c 

Deep sequencing

13318 reads, 229 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 93952708-93952792 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-502a-1

• bta-mir-502a-2: chrX: 93942730-93942819 [+]
• bta-mir-502b: chrX: 93946864-93946946 [+]
• bta-mir-362: chrX: 93947354-93947418 [+]
• bta-mir-500: chrX: 93948610-93948693 [+]
• bta-mir-660: chrX: 93950762-93950841 [+]
• bta-mir-502a-1: chrX: 93952708-93952792 [+]

Database links

• EntrezGene:MIR502A-1
• miRBase Tracker:MI0009852

Mature sequence bta-miR-502a

• Accession: MIMAT0009338
• Sequence: 51 - aaugcaccugggcaaggauuca - 72
• Deep sequencing: 22298 reads, 77 experiments
• Evidence: by similarity; MI0003186
• Predicted targets:
  • TargetScanVert:bta-miR-502a

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).