miRBase entry: bta-mir-502a-1

Stem-loop bta-mir-502a-1


Accession
MI0009852
Description
Bos taurus bta-mir-502a-1 precursor miRNA
Gene family
MIPF0000139; mir-500

Literature search
2 open access papers mention bta-mir-502a-1
(2 sentences)

Sequence

212 reads, 126 reads per million, 55 experiments
ugcccaccccucuaauccuugcucucugggugcuagugcugucuccaugcAAUGCACCUGGGCAAGGAUUCAgagagggugggcu
.(((((((((((((((((((((((...((((((...(((((....)).)))..))))))))))))))))).)))).)))))))).

Structure
u        -    -           ucu      uag   -  u 
 gcccaccc cucu aauccuugcuc   gggugc   ugc ug c
 |||||||| |||| |||||||||||   ||||||   ||| ||  
 cggguggg gagA UUAGGAACGGG   UCCACG   Acg ac u
u        a    C           ---      -UA   u  c 


Annotation confidence Not enough data
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Genome context
chrX: 93952708-93952792 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from bta-mir-502a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-502a

Accession MIMAT0009338
Description Bos taurus bta-miR-502a mature miRNA
Sequence 51 - AAUGCACCUGGGCAAGGAUUCA - 72
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125